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scRNA-seq: Scanpy + AnnData
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  • Resize,w 360,h 240
    DimPlot: 栅格化

    保留坐标轴，对点层做栅格化sc.pl.tsne(scanpy_object_integrated, color='Annotation_broa...

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  • Resize,w 360,h 240
    sc.pp.combat()

    在 表达矩阵 层面 去除批次效应 https://scanpy.readthedocs.io/en/stable/api/generated/s...

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  • 读取和存储 .loom 文件

    读取 .loom 文件：sc.read_loom() 存储.loom 文件：anndata.write_loom(, write_obsm_va...

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  • sc.pp.sample()

    https://scanpy.readthedocs.io/en/stable/generated/scanpy.pp.sample.html#...

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  • Resize,w 360,h 240
    sc.pl.violin()

    sc.pl.violin()https://scanpy.readthedocs.io/en/stable/generated/scanpy.p...

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  • Resize,w 360,h 240
    sc.pl.matrixplot()

    sc.pl.matrixplot()https://scanpy.readthedocs.io/en/stable/generated/scan...

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  • Resize,w 360,h 240
    sc.pl.dotplot()

    sc.pl.dotplot()https://scanpy.readthedocs.io/en/stable/generated/scanpy....

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  • Resize,w 360,h 240
    sc.pl.tsne()

    sc.pl.tsne()https://scanpy.readthedocs.io/en/stable/api/generated/scanpy...

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  • Scanpy: merge

    将两个 Scanpy object merge 在一起 objects_for_merge=[scanpy_object_used_1, sca...

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